STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB58685.1Heavy metal-associated domain protein; KEGG: fnu:FN0259 1.7e-14 zinc-transporting ATPase. (73 aa)    
Predicted Functional Partners:
KXB58684.1
Cadmium-exporting ATPase; KEGG: aoe:Clos_1087 1.6e-183 heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.921
KXB58686.1
Putative cadmium efflux system accessory protein; KEGG: rru:Rru_A1450 1.3e-08 ArsR family transcriptional regulator K03741; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.813
luxS
S-ribosylhomocysteinase LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
       0.686
KXB60236.1
Cadmium-exporting ATPase; KEGG: cbl:CLK_1556 2.0e-203 cadA-2; cadmium-translocating P-type ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.619
KXB59429.1
Copper-exporting ATPase; KEGG: ssr:SALIVB_0131 0. copB; putative copper exporting ATPase B; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.619
KXB55527.1
Heavy metal translocating P-type ATPase; KEGG: mru:mru_0534 2.3e-154 ATPase; Psort location: CytoplasmicMembrane, score: 7.88.
  
 
 0.619
KXB55367.1
Copper-exporting ATPase; KEGG: med:MELS_0531 1.2e-239 copper-translocating P-type ATPase; K01533 Cu2+-exporting ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.619
KXB58690.1
Tetratricopeptide repeat protein; KEGG: dsi:Dsim_GD25581 5.2e-21 GD25581 gene product from transcript GD25581-RA; K00907 myosin-light-chain kinase; Psort location: Cytoplasmic, score: 8.96.
   
   0.491
KXB58687.1
tryptophan--tRNA ligase; KEGG: ere:EUBREC_0414 9.4e-149 tryptophanyl-tRNA synthetase II; K01867 tryptophanyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.475
KXB58689.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.475
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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