STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB57970.1Putative toxin-antitoxin system, toxin component; Psort location: Cytoplasmic, score: 8.96. (252 aa)    
Predicted Functional Partners:
KXB57969.1
DNA-binding helix-turn-helix protein; KEGG: clj:CLJU_c36670 2.0e-06 transcriptional regulator; K01356 repressor LexA; Psort location: Cytoplasmic, score: 8.96.
 
    0.949
KXB59306.1
Toxin-antitoxin system, antitoxin component, HicB family.
 
     0.464
KXB54801.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.458
KXB57963.1
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.456
KXB57964.1
KEGG: csh:Closa_1857 1.3e-78 phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the CDS family.
       0.456
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.456
KXB57966.1
RIP metalloprotease RseP; KEGG: rho:RHOM_07190 2.5e-84 putative membrane-associated Zn-dependent protease; K11749 regulator of sigma E protease; Psort location: CytoplasmicMembrane, score: 10.00.
       0.456
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.456
polC
DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
       0.456
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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