STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB57827.1KEGG: csh:Closa_3618 3.5e-133 4-hydroxythreonine-4-phosphate dehydrogenase K00097; Psort location: Cytoplasmic, score: 9.97; Belongs to the PdxA family. (333 aa)    
Predicted Functional Partners:
KXB57828.1
KEGG: pct:PC1_0750 1.3e-48 Protein-N(pi)-phosphohistidine--sugar phosphotransferase; Psort location: Cytoplasmic, score: 8.96.
     0.974
serC
Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
     
 0.856
KXB53526.1
Threonine synthase; KEGG: csh:Closa_0463 1.1e-175 threonine synthase K01733; Psort location: Cytoplasmic, score: 9.97.
    
  0.769
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.761
KXB57826.1
Transporter, gluconate:H+ symporter family; KEGG: eci:UTI89_C3106 1.2e-59 ygbN; inner membrane permease YgbN K03299; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.747
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
 
      0.608
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.569
KXB53530.1
DNA gyrase, B subunit protein; KEGG: csh:Closa_1870 1.5e-285 DNA topoisomerase K02470; Psort location: Cytoplasmic, score: 9.97.
 
      0.447
KXB57825.1
Transcriptional regulator, DeoR family; KEGG: ctu:CTU_41720 3.7e-28 yihW; HTH-type transcriptional regulator YihW; Psort location: Cytoplasmic, score: 9.97.
 
     0.441
KXB52882.1
KEGG: rho:RHOM_16840 1.8e-161 riboflavin biosynthesis protein RibD; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; Psort location: Cytoplasmic, score: 9.97.
      
 0.426
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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