STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dtdD-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (145 aa)    
Predicted Functional Partners:
greA-2
Putative transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.781
KXB57514.1
Hypothetical protein.
       0.773
KXB57515.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: csh:Closa_2377 5.0e-182 multi-sensor signal transduction histidine kinase; K07718 two-component system, sensor histidine kinase YesM; Psort location: CytoplasmicMembrane, score: 9.99.
       0.773
KXB57516.1
KEGG: ppo:PPM_0752 6.0e-44 yesN7; chemotaxis response regulator protein-glutamate methylesterase K07720; Psort location: Cytoplasmic, score: 9.97.
       0.773
KXB57513.1
Putative D-galactose-binding periplasmic protein; KEGG: hiq:CGSHiGG_07610 5.4e-43 galactose-1-phosphate uridylyltransferase K10540.
       0.741
KXB57512.1
Hypothetical protein.
       0.662
KXB57510.1
Peptidase, A24 family; KEGG: ccl:Clocl_2595 3.7e-12 Flp pilus assembly protein, protease CpaA; K02278 prepilin peptidase CpaA; Psort location: CytoplasmicMembrane, score: 10.00.
       0.642
KXB57509.1
Type II/IV secretion system protein; KEGG: pfe:PSF113_4183 1.4e-74 tadA; TadA protein K02283; Psort location: Cytoplasmic, score: 9.97.
       0.635
KXB57511.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.635
KXB57505.1
Hypothetical protein; KEGG: fnu:FN0522 1.0e-06 exonuclease SbcC K03546.
       0.577
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.