STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB57282.1UMP kinase domain protein; KEGG: eel:EUBELI_00848 1.4e-28 uridylate kinase; K09903 uridylate kinase; Psort location: Cytoplasmic, score: 9.26. (84 aa)    
Predicted Functional Partners:
KXB57283.1
Hypothetical protein; KEGG: eel:EUBELI_00848 8.6e-20 uridylate kinase; K09903 uridylate kinase; Psort location: Cytoplasmic, score: 8.96.
     0.894
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
   
 
 0.854
pyrF
KEGG: csh:Closa_1598 9.0e-112 orotidine 5'-phosphate decarboxylase K01591; Psort location: Cytoplasmic, score: 8.96; Belongs to the OMP decarboxylase family. Type 2 subfamily.
   
 
 0.834
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
 
  
 0.774
rplA
Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
 
  
 0.760
KXB61077.1
Phosphoribulokinase/uridine kinase family protein; KEGG: hhd:HBHAL_1979 1.9e-111 prk; phosphoribulokinase; Psort location: CytoplasmicMembrane, score: 9.99.
   
 
 0.747
KXB57334.1
KEGG: cpy:Cphy_3519 9.0e-160 phosphoribulokinase/uridine kinase; K00876 uridine kinase; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.747
rpsB
Ribosomal protein S2; KEGG: apb:SAR116_0519 7.9e-65 30S ribosomal protein S2 K02967; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family.
  
  
 0.734
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.722
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.668
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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