STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB56892.1Signal peptidase I; KEGG: sni:INV104_08700 1.3e-23 Signal peptidase I; K03100 signal peptidase I; Psort location: Cytoplasmic, score: 8.96; Belongs to the peptidase S26 family. (161 aa)    
Predicted Functional Partners:
KXB56890.1
Sortase, SrtB family; KEGG: snc:HMPREF0837_11469 3.6e-37 sortase; K08600 sortase B.
 
     0.856
KXB60859.1
KEGG: csh:Closa_3890 7.6e-60 signal peptidase I; K03100 signal peptidase I; Psort location: CytoplasmicMembrane, score: 7.88; Belongs to the peptidase S26 family.
 
  
0.841
KXB56891.1
Sortase B signal domain, QVPTGV class; KEGG: azc:AZC_1301 8.0e-05 endoglucanase; K01179 endoglucanase K01183.
       0.789
KXB56889.1
Sortase B cell surface sorting signal; Psort location: OuterMembrane, score: 9.49.
       0.773
KXB53938.1
KEGG: csh:Closa_2104 1.3e-32 signal peptidase I; K03100 signal peptidase I; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the peptidase S26 family.
  
 
 
0.662
KXB56893.1
Von Willebrand factor type A domain protein; KEGG: pfa:PF13_0302 0.00059 phosphatase 2A regulatory subunit-related protein, putative K11583; Psort location: OuterMembrane, score: 9.49.
  
    0.633
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
  
  
 0.531
KXB56888.1
CutC family protein; Psort location: Cytoplasmic, score: 8.96; Belongs to the CutC family.
       0.460
KXB59527.1
KEGG: cbn:CbC4_0564 2.8e-62 rpoN; RNA polymerase sigma-54 factor K03092; Psort location: Cytoplasmic, score: 9.97.
   
    0.437
KXB59323.1
Signal peptidase I; KEGG: faa:HMPREF0389_00799 6.7e-84 signal peptidase I; K13280 signal peptidase, endoplasmic reticulum-type; Psort location: CytoplasmicMembrane, score: 10.00.
    
 0.428
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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