STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB56327.1Hypothetical protein; KEGG: mmd:GYY_01965 0.0016 DNA polymerase Pol2; K02319 DNA polymerase I; Psort location: Cytoplasmic, score: 8.96. (358 aa)    
Predicted Functional Partners:
KXB56331.1
Hydrolase, NUDIX family; KEGG: aae:aq_158 5.1e-15 apfA; AP4A hydrolase; K03574 7,8-dihydro-8-oxoguanine triphosphatase; Psort location: Cytoplasmic, score: 8.96; Belongs to the Nudix hydrolase family.
 
    0.737
KXB60371.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.694
KXB60080.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.664
KXB53554.1
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
    0.625
KXB53508.1
Hypothetical protein; KEGG: ccb:Clocel_4033 0.0092 CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA; Psort location: Cytoplasmic, score: 8.96.
  
     0.623
KXB56349.1
Tetratricopeptide repeat protein; KEGG: apb:SAR116_1534 1.1e-05 hypothetical protein.
  
     0.617
KXB56343.1
Hypothetical protein; KEGG: pml:ATP_00238 3.4e-05 cca; CCA-adding enzyme (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase); K00974 tRNA nucleotidyltransferase (CCA-adding enzyme); Psort location: Cytoplasmic, score: 8.96.
  
     0.609
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
       0.556
KXB60495.1
Exonuclease; KEGG: ppo:PPM_1485 1.5e-10 exoN1; exonuclease domain-containing protein 1; Psort location: Cytoplasmic, score: 8.96.
  
   
 0.551
KXB56344.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.543
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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