STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB56399.1KEGG: taz:TREAZ_2612 4.2e-75 RNA ligase, family; Psort location: Cytoplasmic, score: 8.96. (342 aa)    
Predicted Functional Partners:
pheS
phenylalanine--tRNA ligase, alpha subunit; KEGG: eel:EUBELI_01343 8.0e-136 phenylalanyl-tRNA synthetase; K01889 phenylalanyl-tRNA synthetase alpha chain; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
  
 0.958
KXB59985.1
KEGG: csh:Closa_1348 0. phosphoribosylformylglycinamidine synthase K01952; Psort location: Cytoplasmic, score: 9.94.
  
  
 0.586
KXB56397.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.578
KXB56398.1
BadF/BadG/BcrA/BcrD ATPase family protein; KEGG: bcj:BCAS0466 1.4e-21 putative N-acetylglucosamine kinase; Psort location: Cytoplasmic, score: 8.96.
       0.578
KXB60227.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.530
secF
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
 0.522
KXB56395.1
KEGG: cdf:CD3049 4.9e-33 PTS system transporter subunit IIB; K02760 PTS system, cellobiose-specific IIB component.
       0.522
KXB56396.1
Putative PTS system, cellobiose-specific IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
       0.522
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
 
 0.485
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.457
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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