STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB56148.1KEGG: csh:Closa_3947 1.1e-145 RNA methyltransferase, TrmA family; K03215 23S rRNA (uracil1939-C5)-methyltransferase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (463 aa)    
Predicted Functional Partners:
KXB56150.1
PDZ/DHR/GLGF domain protein; KEGG: bpb:bpr_I2835 2.4e-47 serine protease HtrA family protein; Psort location: Periplasmic, score: 9.44.
  
    0.668
KXB56147.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.628
KXB56149.1
HDIG domain protein; KEGG: bmq:BMQ_0577 4.5e-39 3'-5' exoribonuclease YhaM K03698; Psort location: Cytoplasmic, score: 8.96.
       0.626
KXB60433.1
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
     0.576
pheT
KEGG: csh:Closa_2215 0. phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain; Psort location: Cytoplasmic, score: 9.97.
 
    0.453
KXB54903.1
Putative ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.432
KXB55587.1
NOL1/NOP2/sun family protein; KEGG: bbe:BBR47_43550 4.0e-86 ribosomal RNA small subunit methyltransferase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.424
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.419
KXB56151.1
Hypothetical protein; KEGG: pfe:PSF113_1419 8.2e-20 yfgO; protein YfgO K03548; Psort location: CytoplasmicMembrane, score: 10.00.
       0.401
KXB56154.1
ABC transporter, permease protein; KEGG: dmr:Deima_0792 3.5e-14 polyamine-transporting ATPase K02049; Psort location: CytoplasmicMembrane, score: 10.00.
       0.401
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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