STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB55487.1Endonuclease/exonuclease/phosphatase family protein; KEGG: spv:SPH_2227 2.7e-16 hypothetical protein; K01142 exodeoxyribonuclease III; Psort location: Cytoplasmic, score: 8.96. (271 aa)    
Predicted Functional Partners:
KXB55486.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
KXB55485.1
Hypothetical protein; KEGG: gva:HMPREF0424_0734 3.7e-15 hypothetical protein; K03655 ATP-dependent DNA helicase RecG.
     
 0.508
KXB55488.1
23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: csh:Closa_2855 1.1e-115 RNA methyltransferase, TrmA family; K00599; Psort location: Cytoplasmic, score: 9.97; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.494
KXB55489.1
Creatinase; KEGG: bpb:bpr_I1063 3.1e-134 metallopeptidase M24 family; K01262 Xaa-Pro aminopeptidase; Psort location: Cytoplasmic, score: 8.96.
       0.494
KXB55490.1
KEGG: bmd:BMD_1322 3.1e-24 Cof-like hydrolase K07024; Psort location: Cytoplasmic, score: 8.96.
       0.494
KXB55491.1
Phosphorylase, glycogen/starch/alpha-glucan family; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
       0.494
ileS
isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.
       0.487
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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