STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB55563.1Transporter, betaine/carnitine/choline family; KEGG: mct:MCR_0468 2.0e-43 choline/glycine betaine transporter K02168; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the BCCT transporter (TC 2.A.15) family. (497 aa)    
Predicted Functional Partners:
KXB58127.1
Choline/ethanolamine kinase; KEGG: tpl:TPCCA_0107 1.3e-133 putative bifunctional choline-phosphate cytidylyltransferase/choline kinase; Psort location: Cytoplasmic, score: 8.96.
 
     0.764
KXB55561.1
Metallo-beta-lactamase domain protein.
 
     0.608
KXB55560.1
LD-carboxypeptidase; KEGG: gwc:GWCH70_1976 4.2e-27 peptidase U61 LD-carboxypeptidase A; K01297 muramoyltetrapeptide carboxypeptidase; Psort location: Cytoplasmic, score: 8.96.
 
     0.584
KXB58056.1
Cell wall-binding repeat protein; KEGG: spv:SPH_2087 2.4e-14 autolysin K01446.
  
     0.543
KXB55562.1
Hypothetical protein.
       0.512
KXB58128.1
Cell wall-binding repeat protein; KEGG: sor:SOR_1423 5.6e-18 cell wall hydrolase/autolysin K01448; Psort location: OuterMembrane, score: 9.52.
  
     0.498
KXB60633.1
Cell wall-binding repeat protein; KEGG: snb:SP670_0097 1.3e-18 autolysin.
  
     0.472
KXB59535.1
Cell wall-binding repeat protein; KEGG: sor:SOR_1423 6.9e-21 cell wall hydrolase/autolysin K01448; Psort location: OuterMembrane, score: 9.52.
  
     0.459
KXB57374.1
Cell wall-binding repeat protein; KEGG: spv:SPH_0067 4.9e-17 lytic amidase (N-acetylmuramoyl-L-alanine amidase) K01447.
  
     0.456
KXB56684.1
Cell wall-binding repeat protein; KEGG: sor:SOR_1423 1.4e-11 cell wall hydrolase/autolysin K01448.
 
     0.451
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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