STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB55607.1KEGG: pfe:PSF113_4138 0.0033 TetR family transcriptional regulator; Psort location: Cytoplasmic, score: 8.96. (198 aa)    
Predicted Functional Partners:
KXB55608.1
Flavodoxin-like protein; KEGG: sgo:SGO_2084 3.9e-63 quinone family NAD(P)H dehydrogenase; K00355 NAD(P)H dehydrogenase (quinone); Psort location: Cytoplasmic, score: 9.26.
 
     0.829
KXB55604.1
Hypothetical protein.
       0.507
KXB55605.1
Hypothetical protein.
       0.507
KXB55606.1
Hypothetical protein.
       0.507
KXB60824.1
Transporter, major facilitator family protein; KEGG: cfu:CFU_2187 9.2e-23 pyridoxal phosphate-dependent aminotransferase K00836; Psort location: CytoplasmicMembrane, score: 10.00.
  
   
 0.468
KXB53967.1
Putative CoA-substrate-specific enzyme activase; KEGG: bbp:BBPR_0457 0. (R)-2-hydroxyglutaryl-CoA dehydratase activator; Psort location: Cytoplasmic, score: 8.96.
     
 0.427
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.