STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB54518.1Pentapeptide repeat protein; KEGG: naz:Aazo_2673 4.5e-11 serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial; Psort location: Extracellular, score: 9.71. (244 aa)    
Predicted Functional Partners:
KXB54516.1
Hypothetical protein.
       0.773
KXB54517.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
KXB54519.1
Hypothetical protein.
       0.773
KXB54520.1
Hypothetical protein.
       0.773
KXB54521.1
Hypothetical protein.
       0.773
KXB54522.1
Hypothetical protein.
       0.773
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 
 0.759
KXB53530.1
DNA gyrase, B subunit protein; KEGG: csh:Closa_1870 1.5e-285 DNA topoisomerase K02470; Psort location: Cytoplasmic, score: 9.97.
    
 
 0.759
KXB54511.1
KEGG: shn:Shewana3_3590 6.7e-13 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.26.
  
    0.741
KXB54509.1
CHC2 zinc finger domain protein; KEGG: tbe:Trebr_1363 1.6e-13 DNA primase; K02316 DNA primase; Psort location: Cytoplasmic, score: 8.96.
  
    0.733
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.