STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB53938.1KEGG: csh:Closa_2104 1.3e-32 signal peptidase I; K03100 signal peptidase I; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the peptidase S26 family. (176 aa)    
Predicted Functional Partners:
KXB60859.1
KEGG: csh:Closa_3890 7.6e-60 signal peptidase I; K03100 signal peptidase I; Psort location: CytoplasmicMembrane, score: 7.88; Belongs to the peptidase S26 family.
 
 
 
0.834
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.742
KXB53937.1
Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
    0.742
KXB53935.1
TIGR00252 family protein; KEGG: fnu:FN1370 3.4e-25 endonuclease K07460; Belongs to the UPF0102 family.
       0.740
KXB53934.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.732
KXB56892.1
Signal peptidase I; KEGG: sni:INV104_08700 1.3e-23 Signal peptidase I; K03100 signal peptidase I; Psort location: Cytoplasmic, score: 8.96; Belongs to the peptidase S26 family.
  
 
 
0.662
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.543
KXB53940.1
MATE efflux family protein; KEGG: ssr:SALIVB_2015 3.6e-22 queuine tRNA-ribosyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.529
KXB53933.1
Hypothetical protein; KEGG: tan:TA10050 0.0026 DEAD-box family helicase; K13181 ATP-dependent RNA helicase DDX27; Psort location: Cytoplasmic, score: 8.96.
       0.492
KXB53930.1
Exodeoxyribonuclease III; KEGG: lin:lin1894 1.2e-102 hypothetical protein; K01142 exodeoxyribonuclease III; Psort location: Cytoplasmic, score: 9.97.
       0.472
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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