STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB53950.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (148 aa)    
Predicted Functional Partners:
argS
arginine--tRNA ligase; KEGG: csh:Closa_2320 1.8e-202 arginyl-tRNA synthetase K01887; Psort location: Cytoplasmic, score: 9.97.
 
    0.754
KXB59142.1
ANTAR domain protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.731
KXB53946.1
Hypothetical protein.
       0.689
KXB53947.1
Hypothetical protein; KEGG: llk:LLKF_0779 9.7e-06 srtC; sortase; K07284 sortase A; Psort location: Cytoplasmic, score: 8.96.
       0.689
KXB53948.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.689
KXB53949.1
Peptidase, S54 family; KEGG: cin:100186499 5.8e-11 similar to rhomboid-related protein 2; K02857 rhomboid-related protein 1/2/3; Psort location: CytoplasmicMembrane, score: 10.00.
       0.689
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
  
    0.623
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
  
    0.609
ddl
D-ala D-ala ligase protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
    0.578
KXB52986.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
  
     0.559
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.