STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB53953.1FCD domain protein; KEGG: pfe:PSF113_4057 8.1e-24 family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97. (230 aa)    
Predicted Functional Partners:
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
      0.944
ddl
D-ala D-ala ligase protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.791
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.785
KXB61244.1
KEGG: apb:SAR116_0310 6.7e-07 GntR family transcriptional regulator; Psort location: Cytoplasmic, score: 8.96.
  
     0.518
KXB53955.1
Acetyltransferase, GNAT family; KEGG: lsp:Bsph_3263 3.9e-06 spermidine N(1)-acetyltransferase; K00657 diamine N-acetyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
    0.504
KXB53956.1
Putative peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.504
KXB53950.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.480
KXB60794.1
Transcriptional regulator, IclR family protein; KEGG: pfe:PSF113_1336 2.1e-18 pcaR; protein PcaR K02624; Psort location: Cytoplasmic, score: 9.97.
  
    0.400
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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