STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB53541.1Ankyrin repeat protein; KEGG: phu:Phum_PHUM288780 0.00029 ankyrin repeat-containing protein, putative; Psort location: Cytoplasmic, score: 8.96. (445 aa)    
Predicted Functional Partners:
KXB58135.1
Ser/Thr phosphatase family protein; KEGG: lcb:LCABL_10090 2.4e-31 cpdA; 3, 5-cyclic-nucleotide phosphodiesterase; Psort location: Cytoplasmic, score: 8.96.
    
 0.955
KXB54802.1
Sulfate permease; KEGG: eci:UTI89_C1400 9.8e-99 ychM; sulfate transporter YchM K03321; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 
 0.954
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 0.951
KXB53542.1
Radical SAM domain protein; KEGG: pmz:HMPREF0659_A5139 7.2e-13 anaerobic sulfatase maturase K06871; Psort location: Cytoplasmic, score: 8.96.
 
     0.937
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 0.905
KXB60671.1
Hypothetical protein.
    
 0.876
KXB60171.1
WD domain, G-beta repeat protein; KEGG: hhy:Halhy_6674 1.2e-09 (myosin heavy-chain) kinase; Psort location: OuterMembrane, score: 9.49.
    
 0.876
KXB60088.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: cst:CLOST_2294 2.4e-86 molybdopterin oxidoreductase; K00123 formate dehydrogenase, alpha subunit; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.867
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
 0.865
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
 
  0.836
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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