STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB52977.1KEGG: rlt:Rleg2_4805 5.5e-25 MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00. (452 aa)    
Predicted Functional Partners:
KXB53515.1
Hypothetical protein; KEGG: eel:EUBELI_01147 6.7e-68 cytidylate kinase; K00945 cytidylate kinase.
     0.917
KXB55573.1
Hypothetical protein; KEGG: ere:EUBREC_1730 7.2e-32 cytidylate kinase; K00945 cytidylate kinase; Psort location: Cytoplasmic, score: 8.96.
     0.896
KXB59208.1
MATE efflux family protein; KEGG: ssr:SALIVB_2015 1.7e-30 queuine tRNA-ribosyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
  
   
 0.738
KXB52978.1
Hypothetical protein.
       0.737
KXB60030.1
Hypothetical protein; KEGG: mcu:HMPREF0573_11599 6.0e-06 pphA; Ser/Thr and Tyr protein phosphatase (dual specificity); Psort location: CytoplasmicMembrane, score: 10.00.
   
   0.502
rbsA-2
Putative ribose transport ATP-binding protein rbsa; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
       0.499
KXB52980.1
Putative ribose ABC transporter permease protein; KEGG: gdj:Gdia_0690 3.6e-69 monosaccharide-transporting ATPase K10440; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
       0.499
KXB52975.1
Hypothetical protein.
       0.447
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
       0.447
KXB54039.1
KEGG: csh:Closa_0829 1.4e-154 glyceraldehyde-3-phosphate dehydrogenase, type I K00134; Psort location: Cytoplasmic, score: 9.97.
   
    0.412
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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