STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB52866.1RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (143 aa)    
Predicted Functional Partners:
KXB52864.1
Hypothetical protein; Belongs to the UPF0297 family.
 
    0.952
KXB52867.1
Hypothetical protein; KEGG: tmr:Tmar_1219 0.0052 Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase.
       0.847
KXB52870.1
O-methyltransferase; KEGG: cpe:CPE1772 4.4e-32 O-methyltransferase; K00599; Psort location: Cytoplasmic, score: 8.96.
 
     0.732
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
 
  
 0.719
KXB60399.1
Hypothetical protein; KEGG: say:TPY_3350 4.3e-10 ruvX; Holliday junction resolvase; K07447 putative holliday junction resolvase; Psort location: Cytoplasmic, score: 8.96.
  
    0.707
rnj
Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.705
KXB52871.1
Peptidase, U32 family; KEGG: csh:Closa_0899 1.4e-154 peptidase U32; K08303 putative protease; Psort location: Cytoplasmic, score: 8.96.
       0.689
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
    0.655
KXB52869.1
Hypothetical protein; KEGG: sgg:SGGBAA2069_c17740 5.1e-05 putative aminodeoxychorismate lyase K07082.
  
    0.612
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
     
 0.587
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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