STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB52867.1Hypothetical protein; KEGG: tmr:Tmar_1219 0.0052 Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase. (88 aa)    
Predicted Functional Partners:
KXB52866.1
RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.847
KXB60366.1
Putative cell division protein FtsL.
  
     0.773
KXB56343.1
Hypothetical protein; KEGG: pml:ATP_00238 3.4e-05 cca; CCA-adding enzyme (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase); K00974 tRNA nucleotidyltransferase (CCA-adding enzyme); Psort location: Cytoplasmic, score: 8.96.
  
     0.772
KXB60537.1
KEGG: pfh:PFHG_04267 0.0026 hypothetical protein similar to DNA polymerase epsilon catalytic subunit A; K02324 DNA polymerase epsilon subunit 1.
  
     0.767
KXB58066.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
  
     0.767
KXB53508.1
Hypothetical protein; KEGG: ccb:Clocel_4033 0.0092 CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA; Psort location: Cytoplasmic, score: 8.96.
  
     0.767
KXB60080.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.763
KXB56344.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.760
KXB52836.1
Hypothetical protein; KEGG: lbj:LBJ_1060 0.0039 adenylate cyclase-like protein; K01768 adenylate cyclase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.760
KXB56349.1
Tetratricopeptide repeat protein; KEGG: apb:SAR116_1534 1.1e-05 hypothetical protein.
  
     0.759
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.