STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnjHypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (689 aa)    
Predicted Functional Partners:
KXB52870.1
O-methyltransferase; KEGG: cpe:CPE1772 4.4e-32 O-methyltransferase; K00599; Psort location: Cytoplasmic, score: 8.96.
       0.836
KXB52869.1
Hypothetical protein; KEGG: sgg:SGGBAA2069_c17740 5.1e-05 putative aminodeoxychorismate lyase K07082.
  
    0.833
KXB52871.1
Peptidase, U32 family; KEGG: csh:Closa_0899 1.4e-154 peptidase U32; K08303 putative protease; Psort location: Cytoplasmic, score: 8.96.
       0.825
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.783
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
  
 0.758
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
  
 
 0.726
KXB52872.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.725
KXB59971.1
Putative geranyltranstransferase; KEGG: csh:Closa_3237 5.2e-61 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.97.
  
    0.718
KXB52873.1
Peptidase M16 inactive domain protein; KEGG: cbi:CLJ_B3592 2.4e-230 peptidase family protein K06972; Psort location: Cytoplasmic, score: 8.96.
  
    0.716
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.713
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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