STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB52903.1DNA-binding helix-turn-helix protein; KEGG: sgg:SGGBAA2069_c10720 8.7e-06 transcriptional regulator. (151 aa)    
Predicted Functional Partners:
KXB52902.1
KEGG: cjk:jk1840 4.7e-60 fusA; elongation factor G K02355; Psort location: Cytoplasmic, score: 9.97.
 
     0.783
KXB52904.1
Methyltransferase domain protein; KEGG: npu:Npun_F5437 4.8e-19 methyltransferase type 11; Psort location: Cytoplasmic, score: 8.96.
 
     0.780
KXB53557.1
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 6.3e-28 fadD; long-chain-fatty-acid--CoA ligase K03743; Psort location: Cytoplasmic, score: 8.96; Belongs to the CinA family.
    
 0.756
KXB52901.1
KEGG: aae:aq_1484 0.0013 hypothetical protein; K00851 gluconokinase; Psort location: Cytoplasmic, score: 8.96.
 
     0.729
KXB56900.1
KEGG: csh:Closa_1699 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase.
  
 
  0.702
KXB52907.1
Hypothetical protein.
  
     0.649
KXB52905.1
Sigma-70, region 4; KEGG: efc:EFAU004_02773 3.1e-08 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score: 8.96.
  
     0.614
KXB56877.1
DNA-binding helix-turn-helix protein; KEGG: cce:Ccel_3317 2.6e-05 XRE family transcriptional regulator; K01356 repressor LexA; Psort location: Cytoplasmic, score: 8.96.
  
     0.484
KXB52910.1
KEGG: efc:EFAU004_02717 1.7e-07 relaxase/mobilization nuclease domain protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.455
KXB52915.1
TnpX site-specific recombinase family protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.437
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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