STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB52913.1Hypothetical protein; KEGG: pfe:PSF113_0001 0.0043 dnaA; ATPase DnaA K02313; Psort location: Cytoplasmic, score: 8.96. (284 aa)    
Predicted Functional Partners:
KXB52912.1
Phage replisome organizer protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.956
KXB52914.1
Hypothetical protein.
 
     0.951
KXB52910.1
KEGG: efc:EFAU004_02717 1.7e-07 relaxase/mobilization nuclease domain protein; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.944
KXB52909.1
Hypothetical protein.
 
     0.941
KXB52915.1
TnpX site-specific recombinase family protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.886
KXB52907.1
Hypothetical protein.
 
     0.858
KXB60056.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.854
KXB52905.1
Sigma-70, region 4; KEGG: efc:EFAU004_02773 3.1e-08 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score: 8.96.
 
    0.850
KXB58152.1
Phage replisome organizer protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.802
KXB52911.1
Hypothetical protein.
       0.773
Your Current Organism:
Lachnoanaerobaculum saburreum
NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.