STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00019452RING-type domain-containing protein. (182 aa)    
Predicted Functional Partners:
pdam_00011887
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
  0.512
pdam_00005337
Uncharacterized protein.
    
 0.494
pdam_00005105
AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.
    
  0.468
pdam_00025246
Uncharacterized protein.
 
 
  0.455
pdam_00007853
AAA domain-containing protein.
 
 
  0.447
pdam_00019450
AAA domain-containing protein.
 
 
  0.437
pdam_00022147
Uncharacterized protein.
    
  0.406
pdam_00018181
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
  0.405
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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