pdam_00010693 protein (Pocillopora damicornis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pdam_00010693

Uncharacterized protein. (215 aa)

Predicted Functional Partners:

pdam_00017655

0.574

pdam_00017254

0.534

pdam_00004294

0.527

pdam_00020998

0.523

pdam_00006773

0.507

pdam_00015447

0.506

pdam_00003102

0.506

pdam_00009292

0.506

pdam_00000708

0.506

pdam_00004684

0.506

Your Current Organism:

Pocillopora damicornis

NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
pdam_00000708	pdam_00004684	A0A3M6TY06	A0A3M6UCD0	FCP1 homology domain-containing protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.600
pdam_00000708	pdam_00010693	A0A3M6TY06	A0A3M6T6X0	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.506
pdam_00000708	pdam_00017655	A0A3M6TY06	A0A3M6TI38	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.694
pdam_00003102	pdam_00004684	A0A3M6T9L0	A0A3M6UCD0	FCP1 homology domain-containing protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.403
pdam_00003102	pdam_00010693	A0A3M6T9L0	A0A3M6T6X0	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.506
pdam_00003102	pdam_00017655	A0A3M6T9L0	A0A3M6TI38	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.953
pdam_00004294	pdam_00010693	A0A3M6T8K3	A0A3M6T6X0	Uncharacterized protein.	Uncharacterized protein.	0.527
pdam_00004684	pdam_00000708	A0A3M6UCD0	A0A3M6TY06	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	FCP1 homology domain-containing protein.	0.600
pdam_00004684	pdam_00003102	A0A3M6UCD0	A0A3M6T9L0	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	FCP1 homology domain-containing protein.	0.403
pdam_00004684	pdam_00006773	A0A3M6UCD0	A0A3M6UW85	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Uncharacterized protein.	0.764
pdam_00004684	pdam_00010693	A0A3M6UCD0	A0A3M6T6X0	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Uncharacterized protein.	0.506
pdam_00004684	pdam_00017655	A0A3M6UCD0	A0A3M6TI38	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Uncharacterized protein.	0.581
pdam_00006773	pdam_00004684	A0A3M6UW85	A0A3M6UCD0	Uncharacterized protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.764
pdam_00006773	pdam_00010693	A0A3M6UW85	A0A3M6T6X0	Uncharacterized protein.	Uncharacterized protein.	0.507
pdam_00006773	pdam_00017655	A0A3M6UW85	A0A3M6TI38	Uncharacterized protein.	Uncharacterized protein.	0.695
pdam_00009292	pdam_00010693	A0A3M6TU19	A0A3M6T6X0	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.506
pdam_00009292	pdam_00017655	A0A3M6TU19	A0A3M6TI38	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.694
pdam_00010693	pdam_00000708	A0A3M6T6X0	A0A3M6TY06	Uncharacterized protein.	FCP1 homology domain-containing protein.	0.506
pdam_00010693	pdam_00003102	A0A3M6T6X0	A0A3M6T9L0	Uncharacterized protein.	FCP1 homology domain-containing protein.	0.506
pdam_00010693	pdam_00004294	A0A3M6T6X0	A0A3M6T8K3	Uncharacterized protein.	Uncharacterized protein.	0.527