STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00008946CCDC66 domain-containing protein. (1139 aa)    
Predicted Functional Partners:
pdam_00019758
RanGAP1_C domain-containing protein.
   
 0.651
pdam_00015813
SKIP_SNW domain-containing protein.
    
 0.647
pdam_00000324
Uncharacterized protein.
    
 0.645
pdam_00012769
Uncharacterized protein.
    
 0.643
pdam_00022070
Uncharacterized protein.
    
 0.642
pdam_00005357
Uncharacterized protein.
   
 0.629
pdam_00011376
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.608
pdam_00011867
Nuclear pore protein.
   
 0.604
pdam_00008064
Uncharacterized protein.
    
 0.603
pdam_00005660
Uncharacterized protein.
    
 0.588
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.