STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00007073CULLIN_2 domain-containing protein; Belongs to the cullin family. (716 aa)    
Predicted Functional Partners:
pdam_00009444
Uncharacterized protein; Belongs to the SKP1 family.
   
 0.999
pdam_00018820
Zf-rbx1 domain-containing protein.
    
 0.999
pdam_00010793
F-box domain-containing protein.
    
 0.999
pdam_00012479
WD_REPEATS_REGION domain-containing protein.
    
 0.987
pdam_00003456
UBX domain-containing protein.
   
 0.982
pdam_00001255
Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.
   
 0.964
pdam_00018234
MPN domain-containing protein.
   
 0.963
pdam_00015530
Uncharacterized protein.
   
 0.957
pdam_00019651
F-box domain-containing protein.
    
 0.952
pdam_00017612
TIP120 domain-containing protein.
   
 0.944
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.