STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00008175Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (887 aa)    
Predicted Functional Partners:
pdam_00017624
Integrin_b_cyt domain-containing protein.
   
 0.746
pdam_00001495
Integrin beta; Belongs to the integrin beta chain family.
   
 0.619
pdam_00024130
Integrin beta; Belongs to the integrin beta chain family.
   
 0.619
pdam_00017623
Integrin beta; Belongs to the integrin beta chain family.
   
 0.619
pdam_00009639
Uncharacterized protein.
    
 0.581
pdam_00014226
Uncharacterized protein.
   
 0.552
pdam_00004077
Uncharacterized protein.
   
 0.541
pdam_00021514
Uncharacterized protein.
    
 0.538
pdam_00008953
Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.514
pdam_00009441
14_3_3 domain-containing protein; Belongs to the 14-3-3 family.
    
  0.511
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.