STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00017495Uncharacterized protein. (556 aa)    
Predicted Functional Partners:
pdam_00013751
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.999
pdam_00001744
Uncharacterized protein.
    
 0.977
pdam_00011164
Uncharacterized protein.
    
 0.832
pdam_00018907
Uncharacterized protein.
    
 0.808
pdam_00006975
Uncharacterized protein.
    
 0.754
pdam_00016980
Uncharacterized protein.
    
 0.741
pdam_00016981
NAD(P)(+)--arginine ADP-ribosyltransferase.
    
 0.741
pdam_00016414
Uncharacterized protein.
    
 0.731
pdam_00011944
Uncharacterized protein.
    
 0.724
pdam_00001307
Uncharacterized protein.
    
 0.722
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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