Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
pdam_00000935 | pdam_00008601 | A0A3M6T6M2 | A0A3M6U7Y5 | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | VWFA domain-containing protein. | 0.970 |
pdam_00000935 | pdam_00012022 | A0A3M6T6M2 | A0A3M6THM0 | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | STN1_2 domain-containing protein. | 0.903 |
pdam_00002878 | pdam_00003449 | A0A3M6U8T2 | A0A3M6V4Q8 | DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. | Uncharacterized protein. | 0.885 |
pdam_00002878 | pdam_00011658 | A0A3M6U8T2 | A0A3M6UDS6 | DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. | Uncharacterized protein. | 0.636 |
pdam_00002878 | pdam_00012022 | A0A3M6U8T2 | A0A3M6THM0 | DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. | STN1_2 domain-containing protein. | 0.908 |
pdam_00002878 | pdam_00014996 | A0A3M6U8T2 | A0A3M6T5H1 | DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. | Uncharacterized protein. | 0.775 |
pdam_00002878 | pdam_00021595 | A0A3M6U8T2 | A0A3M6U4M4 | DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. | Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. | 0.723 |
pdam_00003449 | pdam_00002878 | A0A3M6V4Q8 | A0A3M6U8T2 | Uncharacterized protein. | DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. | 0.885 |
pdam_00003449 | pdam_00012022 | A0A3M6V4Q8 | A0A3M6THM0 | Uncharacterized protein. | STN1_2 domain-containing protein. | 0.984 |
pdam_00003449 | pdam_00014996 | A0A3M6V4Q8 | A0A3M6T5H1 | Uncharacterized protein. | Uncharacterized protein. | 0.985 |
pdam_00005602 | pdam_00006474 | A0A3M6TKD2 | A0A3M6UY58 | 3'-5' exonuclease domain-containing protein. | Uncharacterized protein. | 0.690 |
pdam_00005602 | pdam_00011658 | A0A3M6TKD2 | A0A3M6UDS6 | 3'-5' exonuclease domain-containing protein. | Uncharacterized protein. | 0.999 |
pdam_00005602 | pdam_00012022 | A0A3M6TKD2 | A0A3M6THM0 | 3'-5' exonuclease domain-containing protein. | STN1_2 domain-containing protein. | 0.935 |
pdam_00005602 | pdam_00013818 | A0A3M6TKD2 | A0A3M6T7N1 | 3'-5' exonuclease domain-containing protein. | Uncharacterized protein. | 0.999 |
pdam_00005602 | pdam_00021595 | A0A3M6TKD2 | A0A3M6U4M4 | 3'-5' exonuclease domain-containing protein. | Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. | 0.999 |
pdam_00006474 | pdam_00005602 | A0A3M6UY58 | A0A3M6TKD2 | Uncharacterized protein. | 3'-5' exonuclease domain-containing protein. | 0.690 |
pdam_00006474 | pdam_00011658 | A0A3M6UY58 | A0A3M6UDS6 | Uncharacterized protein. | Uncharacterized protein. | 0.999 |
pdam_00006474 | pdam_00012022 | A0A3M6UY58 | A0A3M6THM0 | Uncharacterized protein. | STN1_2 domain-containing protein. | 0.935 |
pdam_00006474 | pdam_00013818 | A0A3M6UY58 | A0A3M6T7N1 | Uncharacterized protein. | Uncharacterized protein. | 0.999 |
pdam_00006474 | pdam_00021595 | A0A3M6UY58 | A0A3M6U4M4 | Uncharacterized protein. | Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. | 0.999 |
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