STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00008865WD_REPEATS_REGION domain-containing protein. (364 aa)    
Predicted Functional Partners:
pdam_00015227
Sec5 domain-containing protein.
   
 
 0.888
pdam_00012684
Uncharacterized protein.
    
 
 0.862
pdam_00015425
Uncharacterized protein.
    
 
 0.844
pdam_00000095
Uncharacterized protein.
    
 
 0.757
pdam_00011187
Uncharacterized protein.
      
 0.692
pdam_00013992
Vps53_N domain-containing protein.
    
 
 0.686
pdam_00013995
Uncharacterized protein.
    
 
 0.686
pdam_00010925
WD_REPEATS_REGION domain-containing protein.
    
 
 0.615
pdam_00012268
Brix domain-containing protein.
      
 0.528
pdam_00012973
Uncharacterized protein.
    
 
 0.528
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.