STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00005108Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily. (157 aa)    
Predicted Functional Partners:
pdam_00023045
Protein kinase domain-containing protein.
   
 0.999
pdam_00010788
ATG11 domain-containing protein.
    
 0.998
pdam_00024968
Uncharacterized protein.
   
 0.991
pdam_00003007
WD_REPEATS_REGION domain-containing protein.
    
 0.985
pdam_00009963
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
     
 0.982
pdam_00012713
WD_REPEATS_REGION domain-containing protein.
     
 0.977
pdam_00004924
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 0.971
pdam_00012751
Uncharacterized protein.
    
 0.938
pdam_00016431
Uncharacterized protein.
    
 0.921
pdam_00000159
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.912
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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