STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00014978DAO domain-containing protein. (401 aa)    
Predicted Functional Partners:
pdam_00005853
Uncharacterized protein.
  
 0.960
pdam_00009838
SHMT domain-containing protein.
    
 0.945
pdam_00006233
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.945
pdam_00002011
Aminotran_5 domain-containing protein.
  
 
 0.936
pdam_00018268
Beta_elim_lyase domain-containing protein.
    
 0.930
pdam_00021555
Uncharacterized protein.
    
 0.929
pdam_00000731
Aminotran_1_2 domain-containing protein.
  
 
 0.910
pdam_00001426
5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
    
 0.909
pdam_00000328
Uncharacterized protein.
  
  
 
0.908
pdam_00000329
DAO domain-containing protein.
  
  
 
0.908
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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