STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00006396Uncharacterized protein. (297 aa)    
Predicted Functional Partners:
pdam_00010257
4HBT domain-containing protein.
    
 0.830
pdam_00008718
Uncharacterized protein.
    
 0.809
pdam_00000795
3-hydroxy-3-methylglutaryl coenzyme A reductase.
   
 
 0.763
pdam_00010541
Uncharacterized protein.
   
 
 0.763
pdam_00015473
Pyr_redox_2 domain-containing protein.
    
 0.731
pdam_00014949
Nudix hydrolase domain-containing protein.
    
 0.702
pdam_00000568
Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.
    
  0.671
pdam_00002055
Uncharacterized protein.
     
 0.615
pdam_00010162
Uncharacterized protein.
     
 0.615
pdam_00003411
SSD domain-containing protein.
      
 0.597
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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