STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00022851Uncharacterized protein. (872 aa)    
Predicted Functional Partners:
pdam_00021842
Uncharacterized protein.
    
 
 0.783
pdam_00009403
Uncharacterized protein.
    
 
 0.769
pdam_00004581
Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3.
   
 0.762
pdam_00007057
Histone H3; Belongs to the histone H3 family.
    
 0.739
pdam_00022739
Uncharacterized protein.
    
 0.739
pdam_00005827
Histone domain-containing protein.
    
 0.739
pdam_00025297
Uncharacterized protein.
     
 0.668
pdam_00015711
Uncharacterized protein.
    
 0.659
pdam_00009646
DUF2236 domain-containing protein.
    
 0.659
pdam_00020908
Histone H2A; Belongs to the histone H2A family.
    
 0.657
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.