pdam_00002526 protein (Pocillopora damicornis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pdam_00002526

CAP_C domain-containing protein. (233 aa)

Predicted Functional Partners:

pdam_00009478

0.930

pdam_00010113

0.921

pdam_00019172

0.913

pdam_00004785

0.907

pdam_00008366

0.903

pdam_00001800

0.900

pdam_00011077

0.900

pdam_00010131

0.900

pdam_00018312

0.671

pdam_00006474

0.525

Your Current Organism:

Pocillopora damicornis

NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
pdam_00001800	pdam_00002526	A0A3M6TNK2	A0A3M6TS00	Uncharacterized protein.	CAP_C domain-containing protein.	0.900
pdam_00001800	pdam_00004785	A0A3M6TNK2	A0A3M6U995	Uncharacterized protein.	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	0.900
pdam_00001800	pdam_00008366	A0A3M6TNK2	A0A3M6TBA3	Uncharacterized protein.	IU_nuc_hydro domain-containing protein.	0.900
pdam_00001800	pdam_00009478	A0A3M6TNK2	A0A3M6TG89	Uncharacterized protein.	CN hydrolase domain-containing protein.	0.900
pdam_00001800	pdam_00010113	A0A3M6TNK2	A0A3M6V2T8	Uncharacterized protein.	Uncharacterized protein.	0.904
pdam_00001800	pdam_00010131	A0A3M6TNK2	A0A3M6V2N9	Uncharacterized protein.	Uncharacterized protein.	0.905
pdam_00001800	pdam_00011077	A0A3M6TNK2	A0A3M6UTM8	Uncharacterized protein.	Uncharacterized protein.	0.900
pdam_00001800	pdam_00019172	A0A3M6TNK2	A0A3M6TFW5	Uncharacterized protein.	Uncharacterized protein.	0.938
pdam_00002526	pdam_00001800	A0A3M6TS00	A0A3M6TNK2	CAP_C domain-containing protein.	Uncharacterized protein.	0.900
pdam_00002526	pdam_00004785	A0A3M6TS00	A0A3M6U995	CAP_C domain-containing protein.	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	0.907
pdam_00002526	pdam_00006474	A0A3M6TS00	A0A3M6UY58	CAP_C domain-containing protein.	Uncharacterized protein.	0.525
pdam_00002526	pdam_00008366	A0A3M6TS00	A0A3M6TBA3	CAP_C domain-containing protein.	IU_nuc_hydro domain-containing protein.	0.903
pdam_00002526	pdam_00009478	A0A3M6TS00	A0A3M6TG89	CAP_C domain-containing protein.	CN hydrolase domain-containing protein.	0.930
pdam_00002526	pdam_00010113	A0A3M6TS00	A0A3M6V2T8	CAP_C domain-containing protein.	Uncharacterized protein.	0.921
pdam_00002526	pdam_00010131	A0A3M6TS00	A0A3M6V2N9	CAP_C domain-containing protein.	Uncharacterized protein.	0.900
pdam_00002526	pdam_00011077	A0A3M6TS00	A0A3M6UTM8	CAP_C domain-containing protein.	Uncharacterized protein.	0.900
pdam_00002526	pdam_00018312	A0A3M6TS00	A0A3M6UA33	CAP_C domain-containing protein.	Uncharacterized protein.	0.671
pdam_00002526	pdam_00019172	A0A3M6TS00	A0A3M6TFW5	CAP_C domain-containing protein.	Uncharacterized protein.	0.913
pdam_00004785	pdam_00001800	A0A3M6U995	A0A3M6TNK2	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Uncharacterized protein.	0.900
pdam_00004785	pdam_00002526	A0A3M6U995	A0A3M6TS00	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	CAP_C domain-containing protein.	0.907