STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00002495USP domain-containing protein; Belongs to the peptidase C19 family. (769 aa)    
Predicted Functional Partners:
pdam_00001712
NTF2 domain-containing protein.
   
 
 0.997
pdam_00005183
Ubiquitin carboxyl-terminal hydrolase.
     
 0.876
pdam_00009627
RRM domain-containing protein.
    
 
 0.809
pdam_00002068
PX domain-containing protein.
    
 0.732
pdam_00002978
Caprin-1_dimer domain-containing protein.
   
 
 0.692
pdam_00005081
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
  0.684
pdam_00007682
Uncharacterized protein.
    
 
 0.684
pdam_00015396
Ubiquitin-like domain-containing protein.
    
 0.684
pdam_00001292
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.601
pdam_00017492
OTU domain-containing protein.
      
 0.599
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.