STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00023912DH domain-containing protein. (163 aa)    
Predicted Functional Partners:
pdam_00001560
Uncharacterized protein.
    
  0.612
pdam_00005789
Uncharacterized protein.
    
 0.566
pdam_00018181
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
   
  0.488
pdam_00011891
DUF1681 domain-containing protein.
    
 0.477
pdam_00011887
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
 0.477
pdam_00016430
AP complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.450
pdam_00006900
AP complex subunit beta.
    
 0.450
pdam_00005354
F-BAR domain-containing protein.
    
 0.431
pdam_00005353
MHD domain-containing protein.
    
 0.431
pdam_00011236
Uncharacterized protein.
    
 0.431
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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