STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00012661Uncharacterized protein. (303 aa)    
Predicted Functional Partners:
pdam_00008661
Uncharacterized protein.
    
 0.925
pdam_00013074
Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.
    
 0.914
pdam_00003623
TPR_REGION domain-containing protein.
   
 0.882
pdam_00018772
TPR_REGION domain-containing protein.
   
 0.881
pdam_00003413
BBS1 domain-containing protein.
    
 0.880
pdam_00011666
Uncharacterized protein.
   
 0.826
pdam_00003138
Bardet-Biedl syndrome 2 protein homolog.
   
 0.772
pdam_00016869
BBS2_Mid domain-containing protein.
   
 0.772
pdam_00016870
BBS2_N domain-containing protein.
   
 0.772
pdam_00019688
Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.
    
 0.681
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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