STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00005849Uncharacterized protein. (480 aa)    
Predicted Functional Partners:
pdam_00019764
Uncharacterized protein.
    
 0.995
pdam_00004577
TFIID_20kDa domain-containing protein.
    
 0.993
pdam_00004566
Uncharacterized protein.
    
 
 0.992
pdam_00001338
Uncharacterized protein.
   
 
 0.990
pdam_00021192
Uncharacterized protein.
    
 
 0.955
pdam_00013911
SGF29 C-terminal domain-containing protein.
    
 0.947
pdam_00007991
Uncharacterized protein.
    
 
 0.938
pdam_00003010
Ubiquitinyl hydrolase 1.
    
   0.903
pdam_00003353
Uncharacterized protein.
    
 
 0.898
pdam_00006554
Transcriptional adapter.
    
 0.890
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.