STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00011242Uncharacterized protein. (328 aa)    
Predicted Functional Partners:
pdam_00024080
RuvB-like helicase.
   
 
 0.895
pdam_00014950
RuvB-like helicase.
   
 
 0.886
pdam_00001362
TPR_REGION domain-containing protein.
    
 
 0.835
pdam_00020369
Nop domain-containing protein.
    
 
 0.788
pdam_00017796
Uncharacterized protein.
    
 
 0.700
pdam_00006833
Uncharacterized protein.
      
 0.587
pdam_00005057
PIH1_CS domain-containing protein.
    
 
 0.563
pdam_00008581
Uncharacterized protein.
    
 
 0.555
pdam_00012523
RNA_pol_Rpb5_C domain-containing protein.
    
 
 0.534
pdam_00005179
Uncharacterized protein.
      
 0.533
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.