STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00002877CBFD_NFYB_HMF domain-containing protein. (213 aa)    
Predicted Functional Partners:
pdam_00007286
CBFD_NFYB_HMF domain-containing protein.
   
 
 0.997
pdam_00016164
Uncharacterized protein.
    
 
 0.994
pdam_00019084
Uncharacterized protein.
    
 
 0.705
pdam_00019064
CBFD_NFYB_HMF domain-containing protein.
    
 
 0.580
pdam_00005183
Ubiquitin carboxyl-terminal hydrolase.
      
 0.559
pdam_00023200
TFIIB-type domain-containing protein.
    
 
 0.516
pdam_00024737
Uncharacterized protein.
    
 
 0.495
pdam_00025088
Uncharacterized protein.
    
 
 0.495
pdam_00025477
SNF2_N domain-containing protein.
    
 
 0.495
pdam_00025478
SNF2_N domain-containing protein.
    
 
 0.495
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.