STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00003701DUF3504 domain-containing protein. (600 aa)    
Predicted Functional Partners:
pdam_00003015
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.925
pdam_00006030
Uncharacterized protein.
    
   0.903
pdam_00004347
TF_AP-2 domain-containing protein.
    
 0.893
pdam_00005021
KHA domain-containing protein.
      
 0.601
pdam_00007923
Uncharacterized protein.
  
     0.536
pdam_00002918
Uncharacterized protein.
  
     0.531
pdam_00013512
Uncharacterized protein.
  
     0.529
pdam_00006844
Uncharacterized protein.
      
 0.407
pdam_00009972
Uncharacterized protein.
  
     0.400
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.