STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00003684Ubiquitin carboxyl-terminal hydrolase. (456 aa)    
Predicted Functional Partners:
pdam_00015396
Ubiquitin-like domain-containing protein.
    
 0.964
pdam_00023829
SCA7 domain-containing protein.
    
 0.910
pdam_00003353
Uncharacterized protein.
    
 0.907
pdam_00001338
Uncharacterized protein.
    
 0.904
pdam_00007991
Uncharacterized protein.
    
 0.899
pdam_00017377
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.852
pdam_00015455
Uncharacterized protein.
    
 0.838
pdam_00004577
TFIID_20kDa domain-containing protein.
    
 0.817
pdam_00014248
Transcriptional adapter.
   
 0.811
pdam_00012645
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.805
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.