pdam_00020505 protein (Pocillopora damicornis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pdam_00020505

MARVEL domain-containing protein. (168 aa)

Predicted Functional Partners:

pdam_00000532

0.760

pdam_00001560

0.760

pdam_00018505

0.630

pdam_00002624

0.622

pdam_00006144

0.571

pdam_00011838

0.525

pdam_00000512

0.519

pdam_00018860

0.487

pdam_00002848

0.487

pdam_00006470

0.481

Your Current Organism:

Pocillopora damicornis

NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
pdam_00000512	pdam_00011838	A0A3M6TXU8	A0A3M6TAJ6	Uncharacterized protein.	Uncharacterized protein.	0.544
pdam_00000512	pdam_00020505	A0A3M6TXU8	A0A3M6UF90	Uncharacterized protein.	MARVEL domain-containing protein.	0.519
pdam_00000532	pdam_00001560	A0A3M6TY99	A0A3M6U5I9	Uncharacterized protein.	Uncharacterized protein.	0.943
pdam_00000532	pdam_00002624	A0A3M6TY99	A0A3M6U3M6	Uncharacterized protein.	Uncharacterized protein.	0.760
pdam_00000532	pdam_00018505	A0A3M6TY99	A0A3M6TET8	Uncharacterized protein.	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	0.934
pdam_00000532	pdam_00020505	A0A3M6TY99	A0A3M6UF90	Uncharacterized protein.	MARVEL domain-containing protein.	0.760
pdam_00001560	pdam_00000532	A0A3M6U5I9	A0A3M6TY99	Uncharacterized protein.	Uncharacterized protein.	0.943
pdam_00001560	pdam_00002624	A0A3M6U5I9	A0A3M6U3M6	Uncharacterized protein.	Uncharacterized protein.	0.760
pdam_00001560	pdam_00006470	A0A3M6U5I9	A0A3M6UYD5	Uncharacterized protein.	Uncharacterized protein.	0.658
pdam_00001560	pdam_00018505	A0A3M6U5I9	A0A3M6TET8	Uncharacterized protein.	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	0.934
pdam_00001560	pdam_00020505	A0A3M6U5I9	A0A3M6UF90	Uncharacterized protein.	MARVEL domain-containing protein.	0.760
pdam_00002624	pdam_00000532	A0A3M6U3M6	A0A3M6TY99	Uncharacterized protein.	Uncharacterized protein.	0.760
pdam_00002624	pdam_00001560	A0A3M6U3M6	A0A3M6U5I9	Uncharacterized protein.	Uncharacterized protein.	0.760
pdam_00002624	pdam_00006144	A0A3M6U3M6	A0A3M6TEB3	Uncharacterized protein.	Uncharacterized protein.	0.993
pdam_00002624	pdam_00006470	A0A3M6U3M6	A0A3M6UYD5	Uncharacterized protein.	Uncharacterized protein.	0.696
pdam_00002624	pdam_00020505	A0A3M6U3M6	A0A3M6UF90	Uncharacterized protein.	MARVEL domain-containing protein.	0.622
pdam_00002848	pdam_00018505	A0A3M6U9K7	A0A3M6TET8	Protein kinase domain-containing protein.	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	0.487
pdam_00002848	pdam_00020505	A0A3M6U9K7	A0A3M6UF90	Protein kinase domain-containing protein.	MARVEL domain-containing protein.	0.487
pdam_00006144	pdam_00002624	A0A3M6TEB3	A0A3M6U3M6	Uncharacterized protein.	Uncharacterized protein.	0.993
pdam_00006144	pdam_00006470	A0A3M6TEB3	A0A3M6UYD5	Uncharacterized protein.	Uncharacterized protein.	0.924