STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00014262Peptidase_M3 domain-containing protein. (708 aa)    
Predicted Functional Partners:
pdam_00013742
AMP_N domain-containing protein.
   
 
 0.758
pdam_00021293
Uncharacterized protein; Belongs to the peptidase M16 family.
   
  
 0.754
pdam_00016123
Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.
      
 0.750
pdam_00002811
Dipeptidyl peptidase 3; Belongs to the peptidase M49 family.
   
  
 0.721
pdam_00016064
Uncharacterized protein; Belongs to the peptidase M16 family.
   
  
 0.703
pdam_00018913
M16C_associated domain-containing protein.
    
 
 0.695
pdam_00002624
Uncharacterized protein.
    
   0.667
pdam_00007751
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
  
 0.625
pdam_00001788
MPN domain-containing protein.
 
 
  
 0.624
pdam_00015654
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; ATP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
   
  
 0.619
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.