STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00000387Helicase ATP-binding domain-containing protein. (1231 aa)    
Predicted Functional Partners:
pdam_00005602
3'-5' exonuclease domain-containing protein.
  
 0.969
pdam_00006474
Uncharacterized protein.
  
 0.969
pdam_00005790
Uncharacterized protein.
   
 0.898
pdam_00000025
Ssl1 domain-containing protein.
    
 0.893
pdam_00020386
Uncharacterized protein.
    
 0.892
pdam_00008901
Uncharacterized protein.
    
 0.890
pdam_00000134
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.890
pdam_00006892
Uncharacterized protein.
   
 0.888
pdam_00003759
RING-type domain-containing protein.
    
 0.885
pdam_00016766
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.884
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.