STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00023250EGF-like domain-containing protein. (370 aa)    
Predicted Functional Partners:
pdam_00003456
UBX domain-containing protein.
    
   0.655
pdam_00017906
Uncharacterized protein.
   
 
 0.482
pdam_00011045
Uncharacterized protein.
   
 
 0.482
pdam_00003833
Uncharacterized protein.
   
   0.480
pdam_00021047
Uncharacterized protein.
   
 
 0.478
pdam_00004284
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.477
pdam_00006635
Uncharacterized protein.
   
 
 0.477
pdam_00008150
L51_S25_CI-B8 domain-containing protein.
   
   0.475
pdam_00017008
Uncharacterized protein.
    
 
 0.470
pdam_00003997
Uncharacterized protein.
   
   0.457
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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