STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00001681Uncharacterized protein. (1364 aa)    
Predicted Functional Partners:
pdam_00001740
HMA domain-containing protein.
    
 0.956
pdam_00019571
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
  
  
 0.773
pdam_00009094
CutC domain-containing protein.
     
 0.547
pdam_00014487
Uncharacterized protein.
  
 
 0.511
pdam_00007985
Porphobil_deam domain-containing protein.
  
  
 0.506
pdam_00005200
Thioredoxin domain-containing protein.
     
 0.503
pdam_00012222
Uncharacterized protein.
  
  
 0.503
pdam_00013444
COMM domain-containing protein.
    
 
 0.499
pdam_00012562
CitMHS domain-containing protein.
     
 0.489
pdam_00003200
Uncharacterized protein.
  
  
 0.477
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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