STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00016041Uncharacterized protein. (90 aa)    
Predicted Functional Partners:
pdam_00009866
LEM domain-containing protein.
    
 0.731
pdam_00017739
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 0.678
pdam_00012700
Cupin_8 domain-containing protein.
    
 0.678
pdam_00011480
Uncharacterized protein.
   
 0.624
pdam_00000788
Uncharacterized protein; Belongs to the intermediate filament family.
   
 0.624
pdam_00011730
LTD domain-containing protein.
   
 0.624
pdam_00017023
Uncharacterized protein.
   
 0.609
pdam_00008247
RBM39linker domain-containing protein.
   
 0.562
pdam_00008249
LEM domain-containing protein.
   
 0.562
pdam_00017955
Uncharacterized protein.
   
 
  0.542
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.